Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922693.1_cds_XP_016471455.1_63802
CDS Infomation

[gene=LOC107793590] [db_xref=GeneID:107793590] [protein=protein FRIGIDA-like] [protein_id=XP_016471455.1] [location=complement(join(98060..98511,98585..100103))] [gbkey=CDS]
Sequence

ATGAATACTAGGGCGGATTCCGCCGCTGCCGACGGCAGTGCTACGCCACCATTAGCCACG
CAATTAGTCAAAGCAGAACAGAAGCAGTCAGAATTGCAACAATCTCCAACACATTTTACA
CATATGATTCCCATTGCGAATCTGCGCAAACTCTCCGACGCGCTCTCCGGGTTCCAGCGA
TGCTTCGGCGAGCTACAACGGCACATTGATACCATGCGAACCTCAATCGACTCCTCTCTG
CTACTACTACTGCCGCGAAACAATGAACAGTCCACTACTACCACTCCGCCGACACCGCCA
TTCCCAGAGCCAGAACCATTTGACCCCTCTGAAGAGAAAGAGGAAGAGGAAGAGAAAGAG
CAACTGAAATCCCCTGCTCGTTCAGGGCCAAAATCGTTTCGTTTAGAGCTGAAATTTCCT
CCTCGTTCAGAGGTGGAAATCCTGTGCGAAACAATGAACAGTAACGGTCTGCAGAAGTAC
ATGATAAGGCATCTCTCAAATATAAGAACAGTGAAACGAAGAGTTCCAAAGGCATTGAAA
CTCTCGCCTAATCCTGCAAGGCTGATATTGGAATGCATCGGCGATTTTTATTCTCAAGGG
AGCAACACTTATGTCCAAGGCTCACCTGAAAGGCAGGCTAAAGTATTGCTTTTGGAGTGC
TTCTTGAATATGATGGGAGAGTCCGTAGTTGAGAATGAGGTGAAGGAAGAGGCAGAACAA
GCAGCTTTAGCATGGATTAAGAGGTTGAATTTCAAAGGAGGAGGTATACTACAGGCTCAA
GAAATTGAATGTCGGGGTTTGCTGTTGCTTATTGGGTGTTTCGGGATTCCACAAGCATTT
ACAAATAAAGATATCAAGGATTTGCTGCACCAAAGTTACATCAAGATGATTTCTGCTTCC
CTTAGGAGATCAAGTTTTCTCATGGCAAAGATTCCAGAAATAATAGAGGGTATGTTGAAG
CAAAATATGGTAGTTGAAGCCGTTCATTTTGTCTATTGTTTTGGACTTGAGGAGAGATTT
AACCCTCGTAGACTGTTAACATCATTTTTACAAGAGTCTGAAGTGTCATTATTGGACAAA
ATTAAGAAGTATGAAGAAATGAAGGGATCACAAGATTCAGTTGTTGTTGCTAAGAGTATT
GGTGTAAGAAGGAGGTACGTGGCTGGTTTGAGATCTGCCATCCAATGTTTGGGACGTCAC
AATATTGATCATTCGAAATTTCTCCCCGGGTGGCAATTTGAAATAAAAATAACACGCTTG
GAGAAAGAAATTGCTCAATTGAGGAAGAGGATGAAAAGTGATCGAGAGGTGGCACGAAAG
AGAAAAATTGATGAAGCTAAGTGGTTGGGCAACAAAGAAGTGAAGCACTCACATTTTTCA
AATCCATGTCTGCCACCACAACGTCGAGCTGCTAATCATGTTGATGATAGCAACAACACC
TTGTTAGAAGGTGGTGGGACTGCTGACCGCATTTATGGTCATTCTCTGTACCCTTCGGTA
TTGCATGGACCTGTTACAGGTATATCAGCAGGCACGGATGTTGTTATGCAAGGACGTTCA
TATGCTGGCGGTCATGGAGGAAGTCAAGTTAATAGTACAACCGGGCAAATGGGAAGTCAT
GCTGGTCAGTTATATGGATCACGTGGTGATGCAGCCGTATATGACAGACTGCCCTCCCAC
AGCTATGCTTATAGGCCATCATCCTACTTGGAATGCTCAGGCTCTATGGGGTTGCCAAAC
ACCATACTTGGTGATGCTTATCGGCCTCCACCATACATGGAAAGCTCTAAGGGGTTGCCC
AGTACCATACATGGTGATGTTAATAGGGCACCGCCATACTTAGAAGGCTCTGTGGGGTTA
CCAAGCACCATAACCGGTGATGCATTTAGGCCTCCACCATACTTTGGAGGCTCTACGGGG
TTGTCAAACACCATAACCGGTGATGCATTTAGGCCTCCACCATACTTTTGA

Peptide Sequence

PEP ID

XP_016471455.1
PEP Infomation

PREDICTED: protein FRIGIDA-like [Nicotiana tabacum]
Sequence

MNTRADSAAADGSATPPLATQLVKAEQKQSELQQSPTHFTHMIPIANLRKLSDALSGFQR
CFGELQRHIDTMRTSIDSSLLLLLPRNNEQSTTTTPPTPPFPEPEPFDPSEEKEEEEEKE
QLKSPARSGPKSFRLELKFPPRSEVEILCETMNSNGLQKYMIRHLSNIRTVKRRVPKALK
LSPNPARLILECIGDFYSQGSNTYVQGSPERQAKVLLLECFLNMMGESVVENEVKEEAEQ
AALAWIKRLNFKGGGILQAQEIECRGLLLLIGCFGIPQAFTNKDIKDLLHQSYIKMISAS
LRRSSFLMAKIPEIIEGMLKQNMVVEAVHFVYCFGLEERFNPRRLLTSFLQESEVSLLDK
IKKYEEMKGSQDSVVVAKSIGVRRRYVAGLRSAIQCLGRHNIDHSKFLPGWQFEIKITRL
EKEIAQLRKRMKSDREVARKRKIDEAKWLGNKEVKHSHFSNPCLPPQRRAANHVDDSNNT
LLEGGGTADRIYGHSLYPSVLHGPVTGISAGTDVVMQGRSYAGGHGGSQVNSTTGQMGSH
AGQLYGSRGDAAVYDRLPSHSYAYRPSSYLECSGSMGLPNTILGDAYRPPPYMESSKGLP
STIHGDVNRAPPYLEGSVGLPSTITGDAFRPPPYFGGSTGLSNTITGDAFRPPPYF

Transcript Sequence

Gene sequence data has not been registered.